Day 5 — Friday, January 13th, 2023
Friday January 13th
- 1:30-2:00 Lecture: Why reproducibility and robustness are important principles in science and data analysis and acknowledging the pressures in academia that push people away from reproducible science
- 2:00-2:15 Discussion
- 2:15-2:45 Lecture: Visualizing and Reporting on Regression Models
- 2:45-3:05 Lecture: Data Linkage Methods
- 3:05-3:25 Activity: Working with Joins
- 3:25-3:35 Break
- 3:35-4:00 Activity: Hallway QR Code Challenges
- 4:00-4:15 Lecture: Introduction of the Brown et al (partial) reproduction of Onikye et al’s results
- 4:15-4:30 Homework demonstration
- 4:30-5:25 Time to work on homework + chat together + work on final projects
- 5:25-5:30 Giveaway for a Copy of R for Data Science
- 5:30 Meet Hodu!
Homework 4
- Read the Brown et al reproduction of Onikye et al, run their code, and fill out the worksheet
- https://open.lnu.se/index.php/metapsychology/article/view/2071
- https://osf.io/j32yw/
- Peer review for homework 3
Available/Recommended Materials:
- Reproducibility:
- Draw Me A Project https://masalmon.eu/2021/06/30/r-projects/
- Reproducibility of Scientific Results https://plato.stanford.edu/entries/scientific-reproducibility/
- Best Practices for Scientific Computing https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745
- Good Enough Practices for Scientific Computing https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510
- Replicability, Robustness, and Reproducibility in Psychological Science https://pure.uvt.nl/ws/portalfiles/portal/59415163/MTO_Nuijten_replicability_robustness_and_reproducibility_Annual_Review_of_Psy_2022.pdf
- A manifesto for reproducible science https://www.nature.com/articles/s41562-016-0021
- Regression Modeling:
- Introduction to Poisson Regression, Beyond Multiple Linear Regression https://bookdown.org/roback/bookdown-BeyondMLR/ch-poissonreg.html
- Poisson Regression https://rpubs.com/franzbischoff/poisson_regression
- Logistic Regression, Beyond Multiple Linear Regression https://bookdown.org/roback/bookdown-BeyondMLR/ch-logreg.html
Video Recording
Resources
link to daily google doc
link to PDF slides
Lecture 1: Reproducibility and Robustness
Lecture 2: Regression (part 2!)
Lecture 3: Data linkage methods
link to view slides fullscreen
link to slide PDFs
link to follow along code